Regression Models for Clinical Trials with Correlated Categorical Responses

Regression models for correlated categorical data are presented in which the covariance is a function of measured effects. The regression and covariance parameters are estimated by extended least square methods. A numerical example of a clinical trial comparing two antiemetic treatment regimes for patients receiving chemotherapy is given to illustrate the approach.     

Effects of competition and shading in planktonic communities

A model for several algal species which compete both for light and for nutrients, and which are also subject to settling and diffusion, is considered. The settling speeds and diffusion coefficients are assumed to be small, in a sense to be made precise later, and a singular perturbation argument is used. In certain cases vertical segregation of the algal species is observed, and the mechanism for this is interpreted biologically.Supported by the Danish Natural Science Research Council (Grant No. 11-8321)     

Trehalose and dry dipalmitoylphosphatidylcholine revisited

Dry mixtures of sonicated vesicles of DPPC and trehalose which contained a maximum of 0.2 mol water/mol lipid were examined by differential scanning calorimetry, Fourier transform infrared spectroscopy and freeze-fracture electron microscopy. Samples of dry DPPC and trehalose prepared from aqueous solution had a minimum T_m of 24°C for the gel to liquid-crystalline transition provided that the vesicles were dried with trehalose while the lipid was in liquid-crystalline phase. This low transition is compared to a transition of 105–112°C for dry pure DPPC and of 42°C for hydrated pure DPPC. The present work is an extension of earlier work from this laboratory using both other lipids and other methods of preparation.     

Gene expression changes associated with cytotoxicity identified using cDNA arrays

In order to investigate gene expression changes associated with cytotoxicity, we used cDNA arrays to monitor the expression of over 5,000 genes in response to toxic stress in the HepG2 liver cell line. Cells were treated with cytotoxic doses of acetaminophen, caffeine or thioacetamide for nine time points ranging from 1 to 24 h. Samples of mRNA from each time point were used to prepare radiolabeled cDNA, which was hybridized to nylon-membrane-based cDNA arrays. High-stringency washes were applied to reduce cross-hybridization. Analysis of spot intensities revealed that each compound led to approximately 150-250 gene expression changes that were sustained over at least three adjacent time points. The affected genes could be classified into clusters based on their temporal patterns of differential expression. A common set of 44 genes showed similar expression changes in response to all three compounds. Of these changes, 90% could be confirmed by quantitative RT-PCR analysis. The results indicate that detailed array-based time-course studies, coupled with a sensitive and highly specific confirmation assay, provide a powerful means of identifying cytotoxicity-associated gene expression changes. Electronic Publication     

Reduced ribosomal thermal denaturation in Listeria monocytogenes following osmotic and heat shocks

Abstract Increased thermotolerance of Listeria monocytogenes induced by exposure to a high NaCl concentration or a sublethal heat shock was concurrent with increased thermal stability of the 30S ribosomal subunit as measured by differential scanning calorimetry. It is proposed that protection of the 30S subunit is a critical mechanism for increased thermotolerance.     

Vertical structure of Erica umbellata,a representative species of European Ibero-Atlantic dry heaths

The canopy structure of Erica umbellata was studied in order to (a) quantify biomass allocation among several organ types, (b) analyse the possible changes in vertical structure related to season and plant size, and (c) evaluate the effectiveness of non-destructive measures to estimate biomass for a species that is declining in some areas, due to fire and other human disturbances. The study was conducted in NW Spain, sampling E. umbellata plants belonging to three size groups. Destructive (biomass) and non-destructive (frequency, height, diameter) measures were used to characterise the vertical distribution and abundance of photosynthetic, woody, reproductive and dead organs. Allometric equations were calculated to estimate total mass using non-destructive measurements. As E. umbellata increases in size, those organs with a higher renewal rate (leaves, new stems, flowers) increase in the upper strata. Seasonal differences are recorded for the reproductive organs and new stems. A sharp decrease in the green/total phytomass ratio (from 0.51 to 0.17) is observed as plant size increases. Organ biomass can be accurately predicted from total weight and it is also possible to estimate the total weight from non-destructive measures, which provides an easier way of recording data in the field.     

Further results on the survival of a gene represented in a founder population

This paper is concerned with gene survival in a population which may increase without density dependence according to a generalization of the Moran model for haploid individuals. A selective advantage to one allele and the possibility of differential reproductive rates are allowed. Simple conditions are given for ultimate homozygosity to be certain and for the possibility of ultimate polymorphism. The results complement and extend those of Heyde (1981, 1982).